rs30140175 SNP Detail

Summary

• ID
  rs30140175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:14931903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCACTTT GGGGATTGTT
  TGGAATCAAG TTTCCCAGCC GGCCCGTCTA AGGTTTTGAT TGGATGGCCC ATCAGCTCTT
  CCCAGTTTGA TTCCCAAGTT ACAAATCTGG AGGCAAAGCC AAGTTCCTGT GATGAAAAAC
  CAGAAAGAAA ATATTTAGGT GAGTTTTTGT TTGGGCAGTT ATCGAATAGA AGAAACAGCA
  Y
  GCGCTCTTGT TAGGAGAAAC CTGGGGATTC GCCCTGCTCA TTGCCTTGTG GAGAACCTGG
  AAATACTTTA GTGGAAAGAA GGGAGTTGAT TCAAGTCCAA TCTTGACAAG GAAGCATATT
  TTTCTCCATC CCAAATCCTG TCTAGGTGAG GAGTTGTGGA GGTTAGCTAG CTCTTGGGTG
  TTCTAATTGA GACTATACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47418488	NES11500272	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30140175					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418488	NES11500272	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14931903 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	Intron
Rr660121	regulatory region 660121	1271 bp distal
Tssr76455	transcription start site region 76455	328 bp downstream
Tssr76456	transcription start site region 76456	277 bp downstream
Tssr76457	transcription start site region 76457	246 bp downstream