rs30140258 SNP Detail

Summary

• ID
  rs30140258
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47233902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAATGGG GAAAGCAGAG
  ACCTATGGAT CCCAGAAGGT CACTAGCCAG CCAGTCTAGC TGAAAACCAT CAGCTCCAGA
  TGTGGCGAGG GCCCCTTTCC CCAAAACTAA GGTAGAGAGT AATAGAGCAT CGACTGCTAC
  CCCCAGATGT GAACGCACAG CTGAGAACGC ATCCTGAGTG TGCACACATA CACACGCATG
  Y
  CCACATGAAA AATAACCGTT CCAGACTAGT TCGGCCAGTC ATGGTGGTCC ACATCTATAA
  TCCCAGCACT CATCATAAGT TCCAAGCCAG CCTGGGACAC ACAGTAAGGC CTTGAGCAGG
  AGAAATGGGG AGTTTATTTT CATTAAAAAT TCAAGATAGT TTTCCTGATG TAGACATTCC
  TAAAACTATT ACCACAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46919428	NES10937602	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30140258					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46919428	NES10937602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47233902 () rs orientation: forward

Symbol	Name	Function Class
Gm61910	predicted gene, 61910	1248 bp upstream
Rr690987	regulatory region 690987	1403 bp distal
Rr690988	regulatory region 690988	758 bp distal
Rr690989	regulatory region 690989	1115 bp proximal
Sash3	SAM and SH3 domain containing 3	1411 bp upstream
Tssr160884	transcription start site region 160884	1434 bp upstream
Tssr160885	transcription start site region 160885	1464 bp upstream
Tssr160886	transcription start site region 160886	1524 bp upstream
Tssr163270	transcription start site region 163270	1386 bp upstream
Tssr163271	transcription start site region 163271	1331 bp upstream