rs30140261 SNP Detail

Summary

• ID
  rs30140261
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47234208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCCTTGA GCAGGAGAAA
  TGGGGAGTTT ATTTTCATTA AAAATTCAAG ATAGTTTTCC TGATGTAGAC ATTCCTAAAA
  CTATTACCAC AATCACAATA AACAAACTTA TTCATCACCT CCAAAATGTT CTATATGTCC
  TTAGTTATCT GTCCCTCCAA TTTTTCCAAA TCTCCCCAAA CCAATGTTTT TCGTCCTGTA
  Y
  GGGTGTGATT CTTTGTAAGA AGTAAATTTC TGTCTAGAGA GAGGTGCTAG GTGCTGAAAA
  CAGTAAAGGA TATTTACCTA AACAGTGTGA AATCCAATTA TGGAGACTTT TTTGAAATTT
  CATTTTATTG TCATCTGTAT TTGATAAAGT GTAAATGATA CATACCAGTT GCTTTGTAGT
  GAACAGGAAT CATTGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46919431	NES10937548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30140261					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46919431	NES10937548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47234208 () rs orientation: forward

Symbol	Name	Function Class
Gm61910	predicted gene, 61910	1554 bp upstream
Rr690987	regulatory region 690987	1709 bp distal
Rr690988	regulatory region 690988	1064 bp distal
Rr690989	regulatory region 690989	809 bp proximal
Rr690990	regulatory region 690990	1733 bp proximal
Sash3	SAM and SH3 domain containing 3	1105 bp upstream
Tssr160884	transcription start site region 160884	1128 bp upstream
Tssr160885	transcription start site region 160885	1158 bp upstream
Tssr160886	transcription start site region 160886	1218 bp upstream
Tssr163270	transcription start site region 163270	1692 bp upstream
Tssr163271	transcription start site region 163271	1637 bp upstream