rs30140389 SNP Detail

Summary

• ID
  rs30140389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:116069251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGC CAGCAGGGCA TAGGGCGGCA
  R
  GACCAGTGCA GCCAGGAAAC CCTGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46377474	mCV23873235	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A		A
ss47790373	NES11982991	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	G		G	A	G	A	A	A	G
ss137022423	ENSMUSSNP2792789	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30140389					SNP	G	G	G	A	G	A	G	A	G	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47790373	NES11982991	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:116069251 () rs orientation: forward

Symbol	Name	Function Class
Gm31410	predicted gene, 31410	within coordinates
Rr366687	regulatory region 366687	1882 bp upstream
Rr383972	regulatory region 383972	within coordinates
Rr688005	regulatory region 688005	1190 bp proximal