rs30141174 SNP Detail

Summary

• ID
  rs30141174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47234389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGTTTTT CGTCCTGTAC
  GGGTGTGATT CTTTGTAAGA AGTAAATTTC TGTCTAGAGA GAGGTGCTAG GTGCTGAAAA
  CAGTAAAGGA TATTTACCTA AACAGTGTGA AATCCAATTA TGGAGACTTT TTTGAAATTT
  CATTTTATTG TCATCTGTAT TTGATAAAGT GTAAATGATA CATACCAGTT GCTTTGTAGT
  R
  AACAGGAATC ATTGAAAGTA CTTAAACATC TACCGCAATT GCTCAATGGT AGTAAACTTA
  CCTGGCATGG GTAAGCCATA GGTGAGACCC CTAAGCACTG CAAATCAACA TTGCCATTGT
  CATCATTATC ATCATCATCA CCATCATGTG CTGAATGTAA CCCACAAGAT GGGCGCAATG
  CCCAGGCAGT TGATGAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46919434	NES10937549	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30141174					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46919434	NES10937549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47234389 () rs orientation: forward

Symbol	Name	Function Class
Gm61910	predicted gene, 61910	1735 bp upstream
Rr690987	regulatory region 690987	1890 bp distal
Rr690988	regulatory region 690988	1245 bp distal
Rr690989	regulatory region 690989	628 bp proximal
Rr690990	regulatory region 690990	1552 bp proximal
Sash3	SAM and SH3 domain containing 3	924 bp upstream
Tssr160884	transcription start site region 160884	947 bp upstream
Tssr160885	transcription start site region 160885	977 bp upstream
Tssr160886	transcription start site region 160886	1037 bp upstream
Tssr163270	transcription start site region 163270	1873 bp upstream
Tssr163271	transcription start site region 163271	1818 bp upstream