rs30141294 SNP Detail

Summary

• ID
  rs30141294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57553827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

      CAGAGA AACCCTGTCT CGAAAAACAA AACAAAACAT AAAACAAACA AACAAAAAGA
  GTGTGCATCA CCACTACCCG GCCGGAGTCC ACTTCTTAAA ACCTCTATAT CTGCCAAATT
  Y
  TCATGAGGGG TTGTTGCAAA AATATTGTCA CAAAGAACAA ATTGATAAAC AATGAAAAAA
  AAAAAAAAGG TACAAGGTCC ACAAGAAACA GGAAAGAAGG GAACATGGGT TGATTTTCTA
  GATCTGGGAA CACAGCAGGG AGACCTGACT TACTTCGTGT GTAGGGGAAA GCAGAAAGAG
  ATGCGGTCAG TCCTGCAAGC TACAGGGCCA AAGAACCACA GAGCTTCTTG GAACTCTTCC
  GGGCTTTATT TTCAGCTGAG ATGCAATAGG GAAGTTGTCA CTGGCTGTGT AACAACGTCG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46377479	mCV25232969	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30141294					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57553827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21828	CpG island 21828	442 bp distal
Csk	c-src tyrosine kinase	within coordinates
Rr679716	regulatory region 679716	1018 bp distal
Rr679717	regulatory region 679717	401 bp distal
Rr679718	regulatory region 679718	831 bp distal
Rr679719	regulatory region 679719	51 bp proximal
Rr679720	regulatory region 679720	877 bp proximal
Tssr85319	transcription start site region 85319	1265 bp downstream
Tssr85320	transcription start site region 85320	747 bp downstream
Tssr89802	transcription start site region 89802	1408 bp upstream
Tssr89803	transcription start site region 89803	1364 bp upstream
Tssr89804	transcription start site region 89804	1337 bp upstream
Tssr89805	transcription start site region 89805	1101 bp upstream
Tssr89806	transcription start site region 89806	1003 bp upstream
Tssr89807	transcription start site region 89807	872 bp upstream
Tssr89808	transcription start site region 89808	166 bp downstream
Tssr89809	transcription start site region 89809	202 bp downstream