rs30141645 SNP Detail

Summary

• ID
  rs30141645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:69312360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGCCAGT TTGTGCCAGG
  AGGACAGACA TGTTCTCATA TTTAGAGAGA CAGCTGTGAA GCAGTATTGT TAAGAGTTGC
  GGACACAATA CTGTTAGGTT TGAATAGCTC TCAAGACGTA TTCTAGTGAG AAATCAATTT
  GCTGTAATAC ATTTCTACCA AGATCAGCAG TTAATATTCA TTTTGTTAAC CTAAAACGAG
  Y
  TTATTTTTAT AGTTACTGGA GAAACTTTGG TAGCTAAGTA TGTGTTTTCT TGTCTGTATT
  TCTAGAGTCA GCCTGAACGT CACAATTTTA ATTTCCAAAA TTTTCTTCTC TTTAAGTAGA
  TGCTATTTGT TGAATTTTTC ATTCATAGTG TATCTCTGAA GTGTTATAAA ATGACTTTGC
  TTTATTTGGG GGAGGAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss46378080	mCV27574751	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss61416488	NES16802499	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	C	T	C		C	C	C	T		C	C		T
ss136600700	ENSMUSSNP166006	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
ss322998237	CHEV_9_69252885	CHEVERUD	SCREENING_POP	f	SNP													T			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30141645					SNP	T	T	C	T	C	T	C	C	C	C	C	T	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61416488	NES16802499	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:69312360 () rs orientation: forward

Symbol	Name	Function Class
Ice2	interactor of little elongation complex ELL subunit 2	within coordinates
Tssr85856	transcription start site region 85856	1238 bp downstream