rs30141769 SNP Detail

Summary

• ID
  rs30141769
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:14933615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTAGGTA GCCGACTTCC
  AGGACAAGGA GGACCAGTTT CAAATACAAG GTAGAAGGCA GCTGAAGACC AATGACACTC
  TCAATGTTGT CCTCTGGCTT CCACACGCAC TACATGTAAG AGTGTAAAAC ACACACATAC
  ACATACACAC AAAATTAGCA TATCCTCCCA GGAAGTAGAG CACAGGCCTT TGTGGGGCAG
  Y
  GGAAAGCTTG CTGGAGAAGA GCACCCATCT TCCTTGTTTC TTCCTAGATT ATAGCACACC
  CTTACTAATG GGTCACGCTG ATGCATGGTG TTCTCCCCTA ATAGTTCCTA CTTGAGCACA
  GTGCCCTCCA CTAATGCTTC CCTTTGGAAA CAATACACCC ACCCTGCCCC ATGATTCCTA
  CTAGAACAAC ACTGCCTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss47418512	NES11500071	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs30141769					SNP	T	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47418512	NES11500071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:14933615 () rs orientation: forward

Symbol	Name	Function Class
Cln8	CLN8 transmembrane ER and ERGIC protein	within coordinates
Tssr76456	transcription start site region 76456	1989 bp downstream
Tssr76457	transcription start site region 76457	1958 bp downstream