rs30142009 SNP Detail

Summary

• ID
  rs30142009
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110725408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT AATACACCCG TTTTCCTTAG
  W
  GCCCCTCTGA CGCATGCATG TCCCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46378823	mCV23789770	ABI	CRAMUS_MOUSE	f	SNP		T				A
ss47781399	NES11997622	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A	T	T	T		A	T	A	A		T
ss323194748	CHEV_9_110798844	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30142009					SNP	T	T	T	T	T	A	A	T	T	T	T	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47781399	NES11997622	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110725408 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	441 bp upstream
Rr192781	regulatory region 192781	408 bp distal
Rr205816	regulatory region 205816	407 bp distal
Rr205817	regulatory region 205817	within coordinates
Rr207403	regulatory region 207403	1809 bp distal
Tssr87434	transcription start site region 87434	590 bp downstream
Tssr87435	transcription start site region 87435	559 bp downstream
Tssr87436	transcription start site region 87436	608 bp upstream