rs30142402 SNP Detail

Summary

• ID
  rs30142402
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57171250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC TCTGAGGTTT GGGGCTTTCC
  M
  AATCACATTG CAAATTGGGA CAGAA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46378256	mCV23499342	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss136517954	ENSMUSSNP2779449	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss322971868	CHEV_9_57111774	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30142402					SNP	C	C	A	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57171250 () rs orientation: forward

Symbol	Name	Function Class
1700017B05Rik	RIKEN cDNA 1700017B05 gene	1355 bp upstream
Cpgi21813	CpG island 21813	1065 bp distal
Gm68485	predicted gene, 68485	1297 bp downstream
Gm68491	predicted gene, 68491	477 bp upstream
Rr679623	regulatory region 679623	1931 bp distal
Rr679624	regulatory region 679624	865 bp distal
Rr679625	regulatory region 679625	1177 bp proximal
Tssr89769	transcription start site region 89769	1986 bp upstream
Tssr89770	transcription start site region 89770	1387 bp upstream
Tssr89771	transcription start site region 89771	1358 bp upstream
Tssr89772	transcription start site region 89772	1170 bp upstream
Tssr89773	transcription start site region 89773	1822 bp downstream
Tssr89774	transcription start site region 89774	1840 bp downstream