rs30142821 SNP Detail

Summary

• ID
  rs30142821
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:47235937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGGGCTC AACGCTCACT
  TGAGTAGTAA AAGTACTGAA GGTACTTTCT AAACTCTGGA ATACAGAGCT ATGAGTTGGG
  CCTTTGGAAG TCTAGAGTGA TAGACTGAAG AACATAAGAG TTAAATCCAC AGACATCAGT
  TGGAGAGTTA CAAAATGTCG TGTTCAAATT GAATCCAAAG AGCGTAATTA ATTTTGTCTC
  Y
  CTAGCTCGGG TTCTGTGTTG CTTTTGCTCG AGTGTGTCCT CTGGGGACTA CCTCATTCAA
  AGGGCCCTAC TAGCCTACCC AGCCAAGGTG GTCACAGACT CCCTAACTCT TTGGCAGGAG
  CCATAGCCAT TTCCCACTAG GCTCAGATCT ACAACATCTC CCCCAGGCCA CTGGAGATGA
  AGCAGTAAGT AAATTTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46919461	NES10937561	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30142821					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46919461	NES10937561	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:47235937 () rs orientation: forward

Symbol	Name	Function Class
Rr690989	regulatory region 690989	614 bp distal
Rr690990	regulatory region 690990	4 bp proximal
Sash3	SAM and SH3 domain containing 3	within coordinates
Tssr160884	transcription start site region 160884	578 bp downstream
Tssr160885	transcription start site region 160885	525 bp downstream
Tssr160886	transcription start site region 160886	500 bp downstream
Tssr163272	transcription start site region 163272	846 bp downstream