rs30143420 SNP Detail

Summary

• ID
  rs30143420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44389575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGCGCT CTGTTAACCA
  CTTCCTGCCT AATCTGAAGT ACCTCCCCGA GATGGAGTCG TTCTTAGTAG AACTGGGGGC
  CAATTTTGAT CGGAGGGAGG GTGTCCAGTC CGGGGGTGGG AGTGAAGTCA TGGTTTCCAG
  AAACTCAGAC CCTTGTCCTT GTCCTAGCTG GAGAGGCTAT AGAGTTCTCT GGTTCAGATG
  R
  GTAGGTCTCT TTTCTAAGCA GTGAAAGCCA AGTGGGGTGG TCACTGCGCT GGAACCCCTG
  GGACAAGCTT TAGTGGAGAC TGTTCACGTA GCTTCAAAAT CCAGACTTCC GCCTCCCTGC
  AGCCATTTAT CTGTCAAGGG CTTCAGCCAG AGGGAGGGAG GAAGGTAGCC CACCAGTGAA
  GGGAAGACGA CAGGATGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46378564	mCV25082970	ABI	CRAMUS_MOUSE	f	SNP	G	G	A					A		A
ss47688678	NES11326837	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	A	A	G	A
ss136396165	ENSMUSSNP4919854	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30143420					SNP	G	G	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688678	NES11326837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44389575 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	162 bp proximal
Cpgi21660	CpG island 21660	878 bp proximal
Cpgi21661	CpG island 21661	1629 bp proximal
Gm10023	predicted gene 10023	within coordinates
Gm22540	predicted gene, 22540	1763 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	1975 bp distal
Rr206312	regulatory region 206312	within coordinates
Rr209143	regulatory region 209143	1175 bp distal
Rr368728	regulatory region 368728	1798 bp upstream
Tssr89164	transcription start site region 89164	1446 bp downstream
Tssr89165	transcription start site region 89165	1474 bp downstream