rs30144349 SNP Detail

Summary

• ID
  rs30144349
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:73001528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAAAGA TGTACCACCA
  GTTTTTCACC CAGATAGCTA GCTGTGGATG TTGCTAACGT CCTGATGGCC TTAGCTACCT
  GTAGAGCCAG AACACACCCA AATACCACAG AATGTTTATC CCAGACACTC CCTCCAAAGA
  CCTTTTATTT TTCGGTTTCT CAATCAACGG GATACATATA CTTTATAGAC CCAAGGACGT
  M
  TACAGTTTGA TGGAGACATA TCAGATCCTC CCCTAGGCAC CTAAGCTACT ACATGGAGCC
  TATCTCTGGA GCCCGTCTTC TTGGAAGAAG TAACATATAC TTTGAGTTTG AGGTTTTTTT
  TTTGTTGTTG TTGTTTTGTT TTTTCTGAGA CAGGGTTTCT CTGTGTAGCC CTAGCTGTCC
  TGGAACTCAC TCTGTAGACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss46378574	mCV23263804	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs30144349					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:73001528 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22027	CpG island 22027	1036 bp proximal
Rab27a	RAB27A, member RAS oncogene family	within coordinates
Rr197297	regulatory region 197297	1928 bp distal
Rr206717	regulatory region 206717	472 bp proximal
Tssr86085	transcription start site region 86085	276 bp downstream
Tssr86086	transcription start site region 86086	580 bp upstream
Tssr86087	transcription start site region 86087	598 bp upstream