rs30144853 SNP Detail

Summary

• ID
  rs30144853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:57436669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGCC AGAGAGCTCT GTTGAGAGGC
  Y
  GTTCTCTGCG CTGGTTTAAC AGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46378677	mCV25104555	ABI	CRAMUS_MOUSE	f	SNP	T	T				T		C
ss50712773	NES14261690	PERLEGEN	MM_PANEL2	f	SNP		T	T	C	T		T	C	C	T	T		C	T	C	T
ss136519667	ENSMUSSNP4414044	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30144853					SNP	T	T	T	C	T	T	T	C	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50712773	NES14261690	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57436669 () rs orientation: forward

Symbol	Name	Function Class
Cox5a	cytochrome c oxidase subunit 5A	Intron
Gm26631	predicted gene, 26631	1901 bp downstream
Tssr85310	transcription start site region 85310	431 bp downstream