rs30146041 SNP Detail

Summary

• ID
  rs30146041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:44105431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGAATT TCCACTGGGG
  GTCATGGTGG TACCTCCATG AGCCATCTTC TTATGAGCCA GTTAAGTGGC GCAGAGGAGA
  AAACAGTTTG CTTCCTAAGC TTGCTTCTCA GTAATGTTGA CTGACTAATT GACTAGTTGG
  CTCATGTGGT CACTCATGGG ATGGAGAAGT CTACACTCAT ATTCTATTCT AGCCCACATA
  Y
  ATCATGCCTG GAGCCTGGGG GAGGAGCCTG CTATGTGGGA ATAATACACA CTGAGGATTG
  GACAGGGCAT CCCTGAAGCA AAGTTAAGCC TAGTGCCTCA TGGTGCAAAA GTGGGCACAA
  GGTGGCAGCC ACAGTGGTCC CCTAACTCAC CATAGAACGC CATCCAAGGA ACAACTTGGA
  CCAATTTAAA CCACAAACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49105347	NES12442017	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30146041					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49105347	NES12442017	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:44105431 () rs orientation: forward

Symbol	Name	Function Class
Gm2233	predicted gene 2233	within coordinates