rs30149515 SNP Detail

Summary

• ID
  rs30149515
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:62246792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTTCCA AGGGTCCTGC
  GGTGGCGGCG AGCTCTCTAG GTGCCGGCGG GCTTGGGGGG CGGGAAGGAC GCAGAGGAGA
  CGGGATTCAT CTGATCAACT GCGGCTCGGA TCTCAGTCCT CGGTCGGGAA GCTTGGCGGG
  AGACGCTGTG CCCGAGAAAG GGCGGGTAAG TGCGGCGCTG CCGAGTCCCG CGCGACACCC
  K
  TGTGACCGCC GGGCTGGAAC CCGGTTAGGC TCCCAGACAA GACTAGTTGT CCGGAGGCAA
  AGTTCCTTTC TCTTAGGCAA CCTGAGCAGC TTTCCTCCTC TCGGGGCTGG CTCAAAGGCC
  CCGCTATGGA CGGCGAAAGC GAGGTGGATT TTTCCAGCAA CGGCGTCACC CCTTTGTGGC
  GGAGACGGTC CACCCCTCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45399786	mCV24509511	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30149515					SNP	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:62246792 () rs orientation: forward

Symbol	Name	Function Class
9330121J05Rik	RIKEN cDNA 9330121J05 gene	within coordinates
Arhgef26	Rho guanine nucleotide exchange factor 26	within coordinates
Cpgi13214	CpG island 13214	within coordinates
Rr77681	regulatory region 77681	within coordinates
Rr375082	regulatory region 375082	1912 bp upstream
Tssr29350	transcription start site region 29350	359 bp downstream
Tssr29351	transcription start site region 29351	334 bp downstream
Tssr29352	transcription start site region 29352	202 bp upstream
Tssr29353	transcription start site region 29353	675 bp upstream