rs30149798 SNP Detail

Summary

• ID
  rs30149798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43951234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGCTCCC GGAGAGCAAG
  CAAAACAGCT CCTTCGAGGC CCCCAGGAGA AGGGCCTATT CCCTGACGAT CCAAAACACT
  ACCATCTGCA GCTCGGGCAC CTACAGGTGT GCCCTGCAGG AGCTCGGAGG GCAGCGCAAC
  TTGAGCGGCA CCGTGGTTCT GAAGGTGACA GGTGAACTCA CCTCACTTGC TTCCTTCTCA
  Y
  AGACCAGGGT GCACTTTCTG CAGGCCCCAG TCTCTCCTCT TCCAGAATCA GAACCCACAG
  CTTAGGACAA CATCTGTGGC CGGAAATGAA TTCCTTTGAA GAATATCCTA ACTTTTTCTT
  TATGTGGCTT AATCTATGCA CTGACTTTTG CCCAACATTT GCAAGGGACT GAGGCCAGAA
  ATGACAAATG TACTGTCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49106244	NES12445907	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30149798					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106244	NES12445907	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43951234 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Rr271920	regulatory region 271920	34 bp distal
Rr271921	regulatory region 271921	1167 bp proximal
Rr283596	regulatory region 283596	1834 bp distal
Rr283597	regulatory region 283597	234 bp distal
Tssr119519	transcription start site region 119519	140 bp downstream
Tssr119520	transcription start site region 119520	126 bp upstream