rs30149800 SNP Detail

Summary

• ID
  rs30149800
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43950948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCAGGG TGAAGGCTGT
  GTTGGTTCCT GGTGCTACAA TCACAGCATT GCAGTCTTAT CTTGTTTCAA AGCAAACACA
  GTCTCAAGAG TTTTTATAGA TTCTCTTCTT CTCCCCTGGA ATCCTCATTT ACAGGGATAG
  GGGGTGGGGG AGCACCCTGT CTTGCTTTAA AAACATACAT GTTTTGATGG TGTTGTGAAA
  R
  CAAGTTGTAA AGCCCTCACG CCAGTCTGTC AGTAATTGAC TCTTTGCTGC CTCCTCACAG
  GTCTCCGAGA GTGGCACTGA GAGTGTGGAG CTCCCGGAGA GCAAGCAAAA CAGCTCCTTC
  GAGGCCCCCA GGAGAAGGGC CTATTCCCTG ACGATCCAAA ACACTACCAT CTGCAGCTCG
  GGCACCTACA GGTGTGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49106246	NES12445903	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30149800					SNP	G	G	G	G	G	A	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106246	NES12445903	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43950948 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Rr271919	regulatory region 271919	1748 bp distal
Rr271920	regulatory region 271920	53 bp proximal
Rr271921	regulatory region 271921	1453 bp proximal
Rr283596	regulatory region 283596	1548 bp distal
Rr283597	regulatory region 283597	within coordinates
Tssr119519	transcription start site region 119519	127 bp upstream
Tssr119520	transcription start site region 119520	412 bp upstream