rs30149801 SNP Detail

Summary

• ID
  rs30149801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43950814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTTACAGG TCTCCCAGCC AGTGTTTCTC TCACCCCTGC
  AGGGTGAAGG CTGTGTTGGT TCCTGGTGCT ACAATCACAG CATTGCAGTC TTATCTTGTT
  Y
  CAAAGCAAAC ACAGTCTCAA GAGTTTTTAT AGATTCTCTT CTTCTCCCCT GGAATCCTCA
  TTTACAGGGA TAGGGGGTGG GGGAGCACCC TGTCTTGCTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49106247	NES12445901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30149801					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106247	NES12445901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43950814 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Rr271919	regulatory region 271919	1614 bp distal
Rr271920	regulatory region 271920	187 bp proximal
Rr271921	regulatory region 271921	1587 bp proximal
Rr283596	regulatory region 283596	1414 bp distal
Rr283597	regulatory region 283597	within coordinates
Tssr119519	transcription start site region 119519	261 bp upstream
Tssr119520	transcription start site region 119520	546 bp upstream