rs30149803 SNP Detail

Summary

• ID
  rs30149803
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43950385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAATGTGT TGTATGGCAC
  ATCTTTGAGA AGGAGATGCT GAAAAAACCC AGAACTCAAT CTCCAAGAGA GCTTGGGGAG
  AGAGCCAGTT AGATTGCTTG GCTAGCTTGG GGATCACGGT CCTTCCATAA GGTGCTTTGT
  CATGACTCAT AAAACCTCCT CATGCCACTG TCCCCAGCAT CTTCCTGCCT CTCTTAGAAG
  S
  GACATAAAGC ATTGTCAGCT TCTAATCATC TGTGACCTTG AATGTCAAAG GTGCTCGCTG
  ACAGGGGACC ATTATTCATC TGTACCTTTG GTTTAGTTGA GTTTGAGTTG GCTGGCAGTG
  GCTTTGGTTT TGTTGTTGTT GTTGTTATTG TTTTGGGTTT TTAAAAATAG ATTTAGAAAG
  TAAATTTTGG CATCCAAAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49106249	NES12445897	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30149803					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106249	NES12445897	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43950385 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Rr271919	regulatory region 271919	1185 bp distal
Rr271920	regulatory region 271920	616 bp proximal
Rr283596	regulatory region 283596	985 bp distal
Rr283597	regulatory region 283597	416 bp proximal
Tssr119519	transcription start site region 119519	690 bp upstream
Tssr119520	transcription start site region 119520	975 bp upstream