rs30150636 SNP Detail

Summary

• ID
  rs30150636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43949793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACATTTT TGGTGGTTTT
  GTTGTTGTTG TTGTTGTTGT TGTTGTTGTT GTTGTTGATG GTGGTGGTGG TGATTTTTTT
  TTTGTTGGTT TGGCTGTTTG TTTGTTAATT GTACATTTCT TGAATGTGAA TCGTGTAAAT
  GACAAAAGTA AGCTACAGGG TCAAAGGCTC CATGTGCCTA AAGCCATTTC GGTGGAGGAG
  S
  CAACTACTGA GTACAGATCA GAAACACTTC TAAGCCTTGC AGGCAGTCCA ATCCATAAGA
  ACCCACAGTA AAAAAAAAAA AGCCAGATGT GGTGGCACAT GGTTGTCATC TACATGAGGC
  AGTCAGGTCT GGGGCTAGCT GGCCCCAGTC TAGTGTACAT AGAAAGATTC AGGCCAGATA
  TATATACAGA CAGAGAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49106252	NES12445953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30150636					SNP	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106252	NES12445953	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43949793 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Tssr119519	transcription start site region 119519	1282 bp upstream
Tssr119520	transcription start site region 119520	1567 bp upstream