rs30150638 SNP Detail

Summary

• ID
  rs30150638
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43949490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTACAGT GACGCTTGGG
  TTCTGTTATG ATAGTAAGGC TAGGTAAGGG ATGCCACTTG TCCCAGGGCT TCCTACTGGT
  TGCCAGCCAA GCAGCGAAGG GCAGTTCCAG GCTGTTTAGG GATGCTGACT GCCTGCCTGC
  CAGCACTGGG AGCAATGGTC TGCCTTACTG TTAATGAAAA TCTATTTTGG AAGCTTTGAA
  M
  TTAAGGTGTG TCCAACCTGT TGCCCGAAGG GCAGGCACAT GTGGCTTTGA ATAGCTATAA
  ATGTGGCCCA ACACAAAGTT GTAAATTTAT TTAAAATACT GTGAGACATT TTTGGTGGTT
  TTGTTGTTGT TGTTGTTGTT GTTGTTGTTG TTGTTGTTGA TGGTGGTGGT GGTGATTTTT
  TTTTTGTTGG TTTGGCTGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49106254	NES12445999	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30150638					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106254	NES12445999	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43949490 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Rr271919	regulatory region 271919	290 bp distal
Rr271920	regulatory region 271920	1511 bp proximal
Rr283596	regulatory region 283596	90 bp distal
Rr283597	regulatory region 283597	1311 bp proximal
Tssr119519	transcription start site region 119519	1585 bp upstream
Tssr119520	transcription start site region 119520	1870 bp upstream