rs30151337 SNP Detail

Summary

• ID
  rs30151337
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116697048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCATGA TGATCATTAA
  AATGAGGAGA GACCTGAAGC TTGTGCCGAC CACCTGCAGC ACCTACTAAG TCCGAAGACC
  CATGGGCATC GCTATCGAGG AACGCTGAAG TCTGGGTTTC CCAGCTCACA TTCAAGTGGG
  CTAAATAACC TGGGCCTTTA TGTGTAATTC TGCATCCCTA AGGGAACATT GTACCTGAGA
  K
  GACATGACTC TCAGCATCTC ATGCCAGATT TAAAACTGTA AACTGGAATG GATAGCAGAT
  GAAGACAATT ATCTCAGGCA AAAAAAAAAA AAAAAAAAAA AAAGAAAGAA AGAAAGAAAG
  AAAGAAAGAA AAAAGAGAAA AGAAAGAATA AATGGAGATT GTGTCTTTGG GAATGAGACA
  GGTTTGGTGT AGCCCAGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45399898	mCV24793237	ABI	CRAMUS_MOUSE	f	SNP		T	G					T		T
ss60435754	NES15935124	PERLEGEN	MM_PANEL2	f	SNP	T		G	T	G	T	G		T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30151337					SNP	T	T	G	T	G	T	G	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435754	NES15935124	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116697048 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frrs1	ferric-chelate reductase 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr583800	regulatory region 583800			690 bp proximal
Rr583801	regulatory region 583801			721 bp proximal
Rr583802	regulatory region 583802			962 bp proximal
Tssr31391	transcription start site region 31391			178 bp upstream
Tssr31392	transcription start site region 31392			264 bp upstream
Tssr31393	transcription start site region 31393			298 bp upstream
Tssr31394	transcription start site region 31394			320 bp upstream
Tssr31395	transcription start site region 31395			965 bp upstream