rs30151342 SNP Detail

Summary

• ID
  rs30151342
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14950500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG GGACTATTTG TGAATTGCAC
  K
  TTGTAATGGT CCTATAAAAC ATTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45399904	mCV23564326	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
ss134618294	ENSMUSSNP7189831	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G		G
ss320667953	CHEV_3_14885440	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30151342					SNP	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14950500 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	833 bp upstream
Cpgi12992	CpG island 12992	575 bp proximal
Rr573722	regulatory region 573722	547 bp proximal
Rr573723	regulatory region 573723	699 bp proximal
Rr573724	regulatory region 573724	999 bp proximal
Rr573725	regulatory region 573725	1046 bp proximal
Rr573726	regulatory region 573726	1729 bp proximal
Rr573727	regulatory region 573727	1782 bp proximal
Rr573728	regulatory region 573728	1964 bp proximal
Tssr826	transcription start site region 826	764 bp upstream
Tssr827	transcription start site region 827	978 bp upstream
Tssr828	transcription start site region 828	994 bp upstream
Tssr829	transcription start site region 829	1084 bp upstream
Tssr830	transcription start site region 830	1165 bp upstream
Tssr831	transcription start site region 831	1186 bp upstream
Tssr832	transcription start site region 832	1275 bp upstream
Tssr28466	transcription start site region 28466	1243 bp upstream
Tssr28467	transcription start site region 28467	1375 bp upstream
Tssr28468	transcription start site region 28468	1948 bp upstream