rs30151564 SNP Detail

Summary

• ID
  rs30151564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43949019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAATGTT GCTGTGTTTT
  GTAACTCCAA GAGCCCCAAT CTTTTAGCTT CCTCCCGGAG ACTCTTGCTT ATTTAGTGAG
  GAACCTTTAA AAGTGGGGAA GACTGTCAAG AAATGGGATT CTCTGTTCAG AGACAGCCCG
  ATGCTGGGAG TGAGCATAAA TCTGCCAGCA GATGTCTCTG CAGCCCACTG TACAGCAACG
  Y
  CAGCACACTG AAAGTTCGGA TCAAAACTGG GTGACCTTGT TGTGAGGCTT CCTACGTTAA
  ACAGAACTGA GCCAGAGTGC ACGCACTTGT GCTTGCACAA ACACACGGGC CTGTGCATTT
  CCCCCCCAGT ATCACTCCCA ACCCCTTGGC TATTTAGTTC CCTGCCAGCG TCCCCCCAGC
  TCTGAACATT GGAGAATTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49106260	NES12445993	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30151564					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49106260	NES12445993	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43949019 () rs orientation: forward

Symbol	Name	Function Class
Cd83	CD83 antigen	within coordinates
Rr271919	regulatory region 271919	within coordinates
Rr271920	regulatory region 271920	1982 bp proximal
Rr283596	regulatory region 283596	within coordinates
Rr283597	regulatory region 283597	1782 bp proximal
Rr286097	regulatory region 286097	1543 bp distal