rs30151652 SNP Detail

Summary

• ID
  rs30151652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43647103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTCACCC GTGGGTGGCC
  CAAAGGCTCT GAATTCCCCG AGCTGGAAAT GCCAGTTAAT TACAGAAGGC CTGGATCTAT
  CTTCTGTTTG CCTGGGTCAC CCGGGAGCCC AAAGCTGGCG TTGCTTGTCT CTGCCTACCT
  TGGATAAAAC AAAGCATCAG ATTCGCCAGG CATGCTGCCC CATCCTGAAG AACCAGAATC
  R
  AGGATCCAGG GACACTCCCT GCCCCACCCA GGGAAATCTG ACTCATAAGG GCAACTAACA
  CCAAACCCCC TTGTTAAGAG TGGGTTTCTC CCATTCTGTT CCTTAAGCTC TTCCTAGTGA
  TGTGAAGAAA GCTTGTTTGA TAAAGCTCGA TTCTAGGTCT TTCTAACTCA CAGAGGGTTT
  TGTTCTTTTT CGTCGTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49107351	NES12425316	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30151652					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49107351	NES12425316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43647103 () rs orientation: forward

Symbol	Name	Function Class
Gm32878	predicted gene, 32878	within coordinates
Gm47683	predicted gene, 47683	within coordinates
Rr283572	regulatory region 283572	within coordinates
Tssr119503	transcription start site region 119503	364 bp upstream