rs30152730 SNP Detail

Summary

• ID
  rs30152730
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105841115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTCTTGG TCTTGCAAAC
  TTTATATGCC CCAGTACAGG GGAATGCCAG GGCCAAGAAG TGGTAGTGGG TGGGTAGGGA
  AGCAGGGCAG GGGGAGGGTA TAGGGAACTT TCGGTATAGC ATTTGAAATG TAAATAAGGA
  AAATATCTAA TAAAAAATGA AAAGAAATTT ACCTATTCAA ACTTGCAAGT ATTAAACAAT
  K
  TTATAGAAGA ATTAAAAAAA AAAGATTTAT TTATTTATTA TATGTTAGTA CACTGTAGCT
  GTCTTCAGAC ACTCCAGAAG AGGGTGTCAG ATTTTGTTAC AGATGGTTGT GAGCCACCAT
  GTAGTTGCTG GGATTTGAAC TCAGGACCTT CGGAAGAGCA GTCAGTGCTC TTAACCACCG
  AGTCTTCTCT CCAGCACCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45400803	mCV23787386	ABI	CRAMUS_MOUSE	f	SNP		G	T			G		G
ss46843505	NES10701406	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	G		T	G	G	G	G	G	G	G
ss135578674	ENSMUSSNP5743190	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30152730					SNP	G	G	T	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843505	NES10701406	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105841115 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	1135 bp upstream
Rr582817	regulatory region 582817	1146 bp distal
Rr582818	regulatory region 582818	782 bp distal
Rr582819	regulatory region 582819	1312 bp proximal
Tssr34938	transcription start site region 34938	1177 bp upstream
Tssr34939	transcription start site region 34939	1169 bp upstream
Tssr34940	transcription start site region 34940	1152 bp upstream
Tssr34941	transcription start site region 34941	1120 bp upstream
Tssr34942	transcription start site region 34942	1088 bp upstream