rs30153087 SNP Detail

Summary

• ID
  rs30153087
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43645916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTTCAG ACAGGTCCTG
  CTCGGGGCAC CAAGGGCTCC AAAGTGGTAC ATGCCTCCTC CTTCCAACAT TTCTCAAGAT
  CCTGTGGCTA CTTTTTAATT TCATCTCAAT GAGTACAGTT GCTCGATAAA TATCTGAGAG
  AGAAGTAAAA GGAGATTTTT AAAAAGAGAC ACAAATGTTA CTGAACATAG TAGGAACTTC
  M
  TGAGTCTTAC AACTCATATC AGGGAGGTAC AGTCAGCAAA TATGCTCACA GTCTTTTCAT
  ACAGTGACCA GCTTTTAAAT GCCAGGTTTA AAAAGGAGCC CAAGCCCATA GCTTTGTGTG
  ATGGCTAATC TTGTTGGTCA ACTTGACACA CCTGACATGA GAGAATCTCA CTTGAAGAAT
  TTGCCAAATG ATGTAGGCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss49107357	NES12425404	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30153087					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49107357	NES12425404	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43645916 () rs orientation: forward

Symbol	Name	Function Class
Gm32878	predicted gene, 32878	within coordinates
Gm47683	predicted gene, 47683	within coordinates
Rr283572	regulatory region 283572	86 bp proximal
Tssr119503	transcription start site region 119503	1551 bp upstream