rs30153575 SNP Detail

Summary

• ID
  rs30153575
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79681471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAATATT CAGTTTGATC
  TACCACAGAT ATCCAAAAGT CACATTTTAC AGATGCTTTT AAGAAAATAA ACCCACGCCT
  GGCTCAGCAC TATTCCACAG GGCAATGACT CCGCCATGGT CTGTTTCCCT TGCGTGGGCA
  GAACCACAGG CTGAGCTAAA CCAAGCAGCG AGGAGAGCAT TCTACATTGT GGTTTCACGA
  Y
  GTCACCCACT CTCTTGTCCA AAGCACTGGA GCAATCCACA TCTTGTATAG TGTAAGGGGA
  ATCCAATGAA AAACCAGCAG TTAAAAGTGA CGCTACATAA AACATAAAGG GGGCAAAACA
  TCCTTTGGTC TTATTTCTCA AGTCAAGAGC TCTCTGTAAA TACAGAGCCC ATTATGCCTG
  GCTGCCTTTC CTTTCCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606214	NES12960793	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30153575					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606214	NES12960793	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79681471 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr413842	regulatory region 413842			within coordinates
Wdfy1	WD repeat and FYVE domain containing 1			mRNA-UTR
				Noncoding-Transcript-Variant