rs30153935 SNP Detail

Summary

• ID
  rs30153935
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152600140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGGCTTA AATTGTGATG
  ACTTTAGTTT ATCGATATTT TTTAAAAATT GTATGCATTT CCTATATCAT ATGTAAGACT
  CTATTGGTCA AAGTCATAAT TATCCCTTTA TTTTGAGGAA TCTTGGTTTT ATCTCTTACA
  CCTAATAGTT GATCCATTTT CAGTTGATAT TTGTACAGGG TGTAGGGTAG AGCTTTGTTC
  Y
  GCTTATGTAG GCATCCACTT GTCCCTACAT CATTTGCTGA AAAAAAAAAA CTTATCCTTT
  TTCCATTTAA AGGAGACTCT AATTTCTTCT TTCTGTTCAT GACACACTGG AGGGAAAAAC
  TAGGTAAGGG GTAAAGTACT GTATGTCCTA ACTGTGGTCA AGTTGACGGC CACTCTCTTC
  TCTGAAGTGA AGAATGTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45399438	mCV22357361	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136104531	ENSMUSSNP3927372	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss321029096	CHEV_3_152557467	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30153935					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152600140 () rs orientation: forward

Symbol	Name	Function Class
Gm46830	predicted gene, 46830	1270 bp upstream
Rr82809	regulatory region 82809	441 bp proximal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	within coordinates