rs30154172 SNP Detail

Summary

• ID
  rs30154172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86169631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAAATTGAT GTTTAAGAGA AGGGACTATA AAAATACTGC TTAGGCATTT TGCTTCTATT
  TTAATACATT TAATACATTT GTTTTGTTAG TAATTCTTTT CCATTTGTAA CCACAACCCC
  TGATAATGCA TGTTGCATAA AAATCTTCAC ATAATATTTT ACAAGGAAAA AAATGAAGAA
  GATCATATGC TAAAGATCAT TTTTCTAGTG TTTGTGATTT TTGGTATAGT ACTTTTCTGT
  GAGGTTCTGG GCTACATATA TATATGTATG TTCATATATA TATATATATA TATATATACA
  Y
  ACACACACAC ATATATATAT ATACATGCAT ATATGTGCAT TTAAATTCTT TATTAAACAT
  TAACATAATT TATAAAATAA TATCCATAGT ATCTCTTTAT TTCCTCTCTT CTCTGTGTTT
  CCAGGACACC ATATTTCTTG TTTTTCCCAC CTCCCTACAG TTGACATTGA TAAAGAAAAC
  CTGAAAACAA CATTATTAGC ATGTCTCTAT ATATCATTAT GTATTTCCCT AAAGCTTTTA
  TAAACAAATA TAACTTCATA TATTTCATGC CTTTGGTATA CAGAAGGTGG CACACTTTAC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45399649	mCV24949297	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135445609	ENSMUSSNP1944260	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30154172					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86169631 () rs orientation: forward

Symbol	Name	Function Class
Btf3-ps12	basic transcription factor 3, pseudogene 12	918 bp downstream
Lrba	LPS-responsive beige-like anchor	within coordinates
Tssr29784	transcription start site region 29784	1129 bp upstream