rs30154670 SNP Detail

Summary

• ID
  rs30154670
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79678431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTCATTAA CAATAACTCG
  CTTCCTGGGA ATCTCATGAC GTGTGCCATG TAAGGAGAGC CTGGCATGTG CATTCTGAAA
  GGAGACGTGA GTGACCACAG GCTCAAGTGA GGAGCCAAGT GCATTCAGAT AGCCTGTATT
  CCCTCCTAAG GTCCCGTTCA TTAATTCTCC CTTAAATATA AAATTTTCCC TTGATTTCTG
  Y
  TGGTCCCTTA GAAGTCTCAA ACTAACCTCA TGTTCTCTAT GCATAGCATA ATGCGGGTGC
  TGTTCTTAAC TGCAGAGCCA TCTCTCCAGG CCCCATTCTT CCTCTAATCT AGTTATCAGA
  AATGTGAAAA TATAATTTCA CAATGCAAAA ATGAAATAGT GCTATAAAAG TCAAGACTAT
  GCTGTAACTG AAACACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606229	NES12960843	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30154670					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606229	NES12960843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79678431 () rs orientation: forward

Symbol	Name	Function Class
Rr413841	regulatory region 413841	1541 bp distal
Wdfy1	WD repeat and FYVE domain containing 1	1548 bp downstream