rs30155363 SNP Detail

Summary

• ID
  rs30155363
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79418414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATCATG ACTCCAGGCA
  GAACTGTTTT AAAACTGTTT AGTTTGAGCA AAAAAGGTGA GATGCTTAAT TTTTTTTTTA
  ATGAGAATCA ACTCCAATTC TTTCAGCACA GTGTTCAAAA TGAGAGTTCA CAGACGCTCA
  AGTTGTTGAT ACTTCTATAT GAGGCCATTC AAATCTTCAG CAAAATCAGG TGTTGCAAGA
  R
  ATAGCTAAGA AACTGTGCTC CAAAAAACAT ACTGCCTACC AGGAAGGGAG GGATTACTGC
  TAGAAGAGAG AGAGTGGGGG TGGAAGGGGG AGAGAGAGGG AGAGAGATTG AGAGATTTTC
  ATATGCCTAG AGCCCTCTTG GCATCAAGAG AACATAGTAC CACAGAAATA CTTCTAGGTT
  TTGGTTGAGT AAGTTGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607429	NES12965840	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30155363					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607429	NES12965840	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79418414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	559 bp distal
Rr17631	regulatory region 17631	214 bp distal
Rr29696	regulatory region 29696	1413 bp distal
Rr29697	regulatory region 29697	213 bp distal
Scg2	secretogranin II	577 bp upstream
Tssr12435	transcription start site region 12435	683 bp upstream
Tssr12436	transcription start site region 12436	662 bp upstream
Tssr12437	transcription start site region 12437	617 bp upstream
Tssr12438	transcription start site region 12438	589 bp upstream