rs30155843 SNP Detail

Summary

• ID
  rs30155843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95032689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT GGCTAGAAAG TGCAGGGACT
  R
  GGAGGGAAAC TAACAGTGAA CTATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss45400448	mCV24559511	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss135510032	ENSMUSSNP4801480	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320841120	CHEV_3_94929300	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs30155843					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95032689 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580819	regulatory region 580819			853 bp distal
Rr580820	regulatory region 580820			8 bp distal
Tmod4	tropomodulin 4			Intron
				mRNA-UTR
Tssr967	transcription start site region 967			929 bp downstream
Tssr30491	transcription start site region 30491			913 bp downstream
Tssr30492	transcription start site region 30492			818 bp downstream
Tssr30493	transcription start site region 30493			811 bp upstream
Tssr30494	transcription start site region 30494			828 bp upstream
Tssr30495	transcription start site region 30495			840 bp upstream
Tssr30496	transcription start site region 30496			862 bp upstream