rs30156040 SNP Detail

Summary

• ID
  rs30156040
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15009988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCCTCCC GAGGGCTGGG
  ATTAAAGGCA TACACCATCA TGCCCAGCCC ATCAAGAGGC TCATAGGTCA TATTATTTAC
  AGCTATGCAG CAGGTCAGAG CACTCAGGCT GGTCCTGAAC TCATTTCATC TCAGCCTCTA
  ACTCTTGATC CCCCTACCGA GGCTTCTGGC TGGGATGGCA TGTGTCACCA CAACTAGCAC
  Y
  GTTTCTAGCT TTTGCTTTAG AGCAGAAAGT CTGGGACTCT CCAGAGGCCA CTGTGGGGTT
  ATTGATTGGG TCTCAGGTGT CAGGAGGCCC AAGGAGTAAA AGACGGTTCA GGGCATGGCC
  TGTCGGTAGA CCAGTAGAAC ACACACATTT ATCAGTGTCT ACAGCCTTTG GGTGGCATGG
  GTTATGGTAC CACAGAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47419740	NES11495008	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30156040					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47419740	NES11495008	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15009988 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm16350	predicted gene 16350	1078 bp downstream
Rr400772	regulatory region 400772	1492 bp upstream
Rr660140	regulatory region 660140	1379 bp proximal
Rr660141	regulatory region 660141	1588 bp proximal
Tssr76469	transcription start site region 76469	1825 bp upstream
Tssr76470	transcription start site region 76470	1892 bp upstream
Tssr76471	transcription start site region 76471	1913 bp upstream
Tssr80480	transcription start site region 80480	1585 bp downstream