rs30156244 SNP Detail

Summary

• ID
  rs30156244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79418335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTCT TTCAGCACAG TGTTCAAAAT
  K
  AGAGTTCACA GACGCTCAAG TTGTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49607430	NES12965838	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	G	T	G		G	G	G	G		T
ss144776226	ENSMUSSNP2804596	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss319807660	CHEV_1_79437193	CHEVERUD	SCREENING_POP	f	SNP								G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30156244					SNP	T	T	G	T	G	T	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607430	NES12965838	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79418335 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	480 bp distal
Rr17631	regulatory region 17631	135 bp distal
Rr29696	regulatory region 29696	1334 bp distal
Rr29697	regulatory region 29697	134 bp distal
Scg2	secretogranin II	498 bp upstream
Tssr12435	transcription start site region 12435	604 bp upstream
Tssr12436	transcription start site region 12436	583 bp upstream
Tssr12437	transcription start site region 12437	538 bp upstream
Tssr12438	transcription start site region 12438	510 bp upstream