GAATC AACTCCAATT CTTTCAGCAC R GTGTTCAAAA TGAGAGTTCA CAGAC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49607431 | NES12965836 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | A | G | A | G | A | A | A | A | A | G | ||
ss144776219 | ENSMUSSNP7000790 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | A | ||||||||||||
ss319807659 | CHEV_1_79437181 | CHEVERUD | SCREENING_POP | f | SNP | A | G | ||||||||||||
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BTBR T<+> Itpr3 |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
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rs30156245 | SNP | G | G | A | G | A | G | A | A | A | A | A | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49607431 | NES12965836 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr1:79418323 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi462 | CpG island 462 | 468 bp distal | ||||||
Rr17631 | regulatory region 17631 | 123 bp distal | ||||||
Rr29696 | regulatory region 29696 | 1322 bp distal | ||||||
Rr29697 | regulatory region 29697 | 122 bp distal | ||||||
Scg2 | secretogranin II | 486 bp upstream | ||||||
Tssr12435 | transcription start site region 12435 | 592 bp upstream | ||||||
Tssr12436 | transcription start site region 12436 | 571 bp upstream | ||||||
Tssr12437 | transcription start site region 12437 | 526 bp upstream | ||||||
Tssr12438 | transcription start site region 12438 | 498 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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