rs30156246 SNP Detail

Summary

• ID
  rs30156246
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79417523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCTTGGG AGAAAAAGAA
  CACATTAGAG AAAGAATCAA AACATAAGGT TTGGTTAACT TTACATTAAT CGGCATGTTG
  ACGTTAAAAT TCTCAACTTT TCTGCTCTCC TTGCATACAG TTTTACTCAG TAACATTATA
  GTTAATGCAT ATTCTCTGAC AAGTCCTGTA AATCACAGAG CCCCTCATTT CGGCACACAC
  K
  TATAGAGTAT CCTTGCCTAA AAAGCAGCAG GTTGTCCGGT TATTCTATCA ATATAAGCTT
  GCCAACGGTC TTTTTCCTCT CATCTGGGAA AACAGGGAGG GACACTCAAA TGAGAACTTT
  CCAGTAAATA GAAGAGAAAG CAGTCTTACC TCTGTCTTAT ATTATGTGGA AGGCTCCAAG
  CATGCTCCTC TCTGCCGCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607432	NES12965834	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30156246					SNP	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607432	NES12965834	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79417523 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	177 bp proximal
Rr17631	regulatory region 17631	78 bp proximal
Rr29696	regulatory region 29696	522 bp distal
Rr29697	regulatory region 29697	within coordinates
Scg2	secretogranin II	within coordinates
Tssr12435	transcription start site region 12435	197 bp downstream
Tssr12436	transcription start site region 12436	209 bp downstream
Tssr12437	transcription start site region 12437	233 bp downstream
Tssr12438	transcription start site region 12438	297 bp downstream