rs30156249 SNP Detail

Summary

• ID
  rs30156249
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79416376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGCTATT TAAGCATACA
  CAGAACATTT CCAAAATAAA CAAATGCTTT CTTCAAGAAA CTGTACCCAT AAACTTGTGA
  GTGATATAAT GAAGTTTAAA TAAAAAGGGT TCTATATGTA TATAATATAT TTCATATTAC
  TTCAGGATTG ATTTAGCTTT GGCAATCAGC TTTCACTACT GTCATGTTAA ATGTTATCTT
  R
  AAAGCCATAT TGAGTGCATT TGCTTTAAGA TCATTATCTT GACATACTCT TAACACATCT
  TAGCATATGG ATTACGTGAT TATCTGAGAA CCCACTACTT TGAAGGGAGG TTTTTCTGTA
  GAATTAGAGA AAGAATGCAC ATTGCAGTTT GAACCACAGC CTAACATGCA TGGCCGACTC
  GTCGCTGACT CTGGTTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49607435	NES12965831	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30156249					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49607435	NES12965831	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79416376 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	1324 bp proximal
Rr17631	regulatory region 17631	1225 bp proximal
Rr29696	regulatory region 29696	24 bp proximal
Rr29697	regulatory region 29697	824 bp proximal
Scg2	secretogranin II	within coordinates
Tssr12435	transcription start site region 12435	1344 bp downstream
Tssr12436	transcription start site region 12436	1356 bp downstream
Tssr12437	transcription start site region 12437	1380 bp downstream
Tssr12438	transcription start site region 12438	1444 bp downstream