rs30156922 SNP Detail

Summary

• ID
  rs30156922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15010296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGCATG GCCTGTCGGT
  AGACCAGTAG AACACACACA TTTATCAGTG TCTACAGCCT TTGGGTGGCA TGGGTTATGG
  TACCACAGAA CAGTTGTTGA CAGTGGCTTC AGAGATGTCC ATAACGAGAA TAATGCAAAC
  ATTTGAACTA TTGTGAGCAT CACCAAATGG CACATGGAGA CTCAGTGTGT ACGTGTTGTT
  R
  GGAAAACTCC CTGTGGATCT GGTGGATACA GCACAGCAGC CTCAGCCTGC GAAAGGCATG
  TGCTCTGAGC AGCAGAGAGG AGTGTGAGCA TAGCTGTGTG GTCTCATGCA CCAAGACCTC
  TTCCTCCAGC TCAGGGCCTT CGCACACAGA CCCTGCTGGG TGGGTTGACC TTGTGGGCAT
  AGAACCTGTA CTATGCACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47419752	NES11495012	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30156922					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47419752	NES11495012	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15010296 () rs orientation: forward

Symbol	Name	Function Class
Arhgef10	Rho guanine nucleotide exchange factor 10	within coordinates
Gm16350	predicted gene 16350	770 bp downstream
Rr400772	regulatory region 400772	1184 bp upstream
Rr660140	regulatory region 660140	1071 bp proximal
Rr660141	regulatory region 660141	1280 bp proximal
Tssr76469	transcription start site region 76469	1517 bp upstream
Tssr76470	transcription start site region 76470	1584 bp upstream
Tssr76471	transcription start site region 76471	1605 bp upstream
Tssr80480	transcription start site region 80480	1277 bp downstream