rs30157273 SNP Detail

Summary

• ID
  rs30157273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79651658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTAATTT TGCCTATTAT
  AAAGGAACAG AACATCAGAA AGTTTCCTTT CTAAATTCCT GTGCTGGCCA GGCCTCCCTG
  CCGTCGGCTT CACCTAGCTG CAGTAATAAT CTCATCGAAC CTCTTTCCAT CATGCCTCGC
  CCTCTCTCTA GTGCAGGGCA CCGCTGTGTA CCACTCACCT TTGCTGAGCC AATTGCAAAG
  Y
  ATTCAAAGCC TTCTGTTTCC AACGTTTTTT TGTCTATAGT GGGAAAGAGG TAGGACTACT
  GAAGAACTTC AAAGCTAAAG AAAACTCAGT GAGTTAAGAC TTAAGTCAAA TTCTGAAACA
  GAACGTTCCC CCGAGTGTGT GGCCCATGTT GGAGAGGGTG GGAATAGACA TTAACTTAAA
  AGTGAGTAGC ATTCTTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49606362	NES12961519	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30157273					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606362	NES12961519	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79651658 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	1969 bp upstream
Cpgi464	CpG island 464	1539 bp distal
Rr413837	regulatory region 413837	1980 bp distal
Rr413838	regulatory region 413838	1479 bp distal
Tssr12441	transcription start site region 12441	1948 bp upstream
Tssr12442	transcription start site region 12442	1853 bp upstream