rs30157994 SNP Detail

Summary

• ID
  rs30157994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79651596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACATCTGC AGGGACGGGA
  CATAGAAGAG GATTGTATGA CTAGAAGTAA ACCCCAGGCT GTGGGGTAAT TTTGCCTATT
  ATAAAGGAAC AGAACATCAG AAAGTTTCCT TTCTAAATTC CTGTGCTGGC CAGGCCTCCC
  TGCCGTCGGC TTCACCTAGC TGCAGTAATA ATCTCATCGA ACCTCTTTCC ATCATGCCTC
  R
  CCCTCTCTCT AGTGCAGGGC ACCGCTGTGT ACCACTCACC TTTGCTGAGC CAATTGCAAA
  GCATTCAAAG CCTTCTGTTT CCAACGTTTT TTTGTCTATA GTGGGAAAGA GGTAGGACTA
  CTGAAGAACT TCAAAGCTAA AGAAAACTCA GTGAGTTAAG ACTTAAGTCA AATTCTGAAA
  CAGAACGTTC CCCCGAGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606363	NES12961518	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30157994					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606363	NES12961518	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79651596 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	1907 bp upstream
Cpgi464	CpG island 464	1477 bp distal
Rr413837	regulatory region 413837	1918 bp distal
Rr413838	regulatory region 413838	1417 bp distal
Tssr12441	transcription start site region 12441	1886 bp upstream
Tssr12442	transcription start site region 12442	1791 bp upstream