rs30157996 SNP Detail

Summary

• ID
  rs30157996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79651198 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTCACA GTCCCCAACA
  GAACAATAGG TGATATACAA GTTGCAACAA AGCCCAGGAA ATGCTAAGAG ACCCCAACAG
  CTGGGCTAGC AAGACACAAA TTAGCTACTG TAAATTACCC GGAAGCCAGG TAAACTGCCC
  CCTGGTGAGG TGGTAAGCTG TTCTGACAGA GAAGCCAGGA CACTGAAGGA AAAGACTTGT
  Y
  CTGGATGGAC AGACCCCAAA GATAGCCTCG GTGGCTTTGG CACAGTACCA GGGAGATCCG
  AGGGATAGGG AGGAACATGG AGACCAAGCT AGAGGCACCT CTGCATCTAC AGCCTCCAGT
  CCCAGGTTCC CACAAACCCC TCTGCCTCCA GGTTCCCAGC TGCTACATAC TCCAATGCTC
  CTTTTAAGCT TGTGTTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606365	NES12961513	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30157996					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606365	NES12961513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79651198 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	1509 bp upstream
Cpgi464	CpG island 464	1079 bp distal
Rr396122	regulatory region 396122	1900 bp downstream
Rr413837	regulatory region 413837	1520 bp distal
Rr413838	regulatory region 413838	1019 bp distal
Tssr12441	transcription start site region 12441	1488 bp upstream
Tssr12442	transcription start site region 12442	1393 bp upstream