rs30157998 SNP Detail

Summary

• ID
  rs30157998
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79650138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTGCTT ACACCTGCGC
  GCGCACCTTC TGCGCTGACC GCGCCTGGTG CCCCAGCTTC CCTTTTGGTC TGGGGTCTGC
  GATCCTTCTT CTGCTGCCAC GTTGTGTGCT TCATGAATGG GACTGGCGAC CTTCCGCCAA
  AAGAAGATGC TTGCCTTTAC ACCTGAGAAA AGTGTAAAAA GCAGTCTGGC CCTACACCTC
  R
  GGGAGAGAGC AGTTCCCAGA GCTAGAAATA CATGAAAAAT GTTTTCACAC ACACTCCCTT
  GAGTTTTGTT TTGCTTTTTA CCAAAATTGC AATTCAAGAA CATTCATAGC CCTCTCCGCT
  TAAAGTTTTC TATTACATTA AGGTACTGAA ACTCGGGGGG GGGGGGAGTG GTGTTTGTTT
  TTCTTCAGCT GTTTTTCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49606367	NES12961526	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A		A	A	A		A
ss319808653	CHEV_1_79668996	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30157998					SNP	A	A	A	A	A	G	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606367	NES12961526	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79650138 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	449 bp upstream
Cpgi464	CpG island 464	19 bp distal
Rr396122	regulatory region 396122	840 bp downstream
Rr413837	regulatory region 413837	460 bp distal
Rr413838	regulatory region 413838	within coordinates
Tssr12441	transcription start site region 12441	428 bp upstream
Tssr12442	transcription start site region 12442	333 bp upstream