rs30158002 SNP Detail

Summary

• ID
  rs30158002
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79649691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCTGGAG CCGCAGGTGT
  CACCTGGAGC GCGCACCGCC TCGACCAGCT CCATCACGAT GCTCAGCCCT ACTCACCATG
  GTCCCGGGTC CCTACAGCAG CGATTGCCCG GGATGCGAGG GCCAGAAGAG ACTGTAGCAG
  CCCGGGCGGC TGACAGGTGA GGCGCTAGCC TCAGACCATG GCTACTTCCC ACAATGCCCT
  Y
  GAACTGAAAG TTTGCAGACT CCTCCCCGCA CCGGGCTGCT CCTCCCCTCC GCTCCTCCCA
  CACACCTTCC TCCTGGCTTC CTCAAATTGT GTCACTCCTT CTCTGCCTCT TCACAAGCCT
  CCCGCTCCAG CTCCCCCTTT TACCCTTTCT CACTCCCTCC TCCTCCCCCT GGTTCTTCCT
  TTGCTCTCCT GCGCCACGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606371	NES12961573	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30158002					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606371	NES12961573	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79649691 () rs orientation: forward

Symbol	Name	Function Class
Ap1s3	adaptor-related protein complex AP-1, sigma 3	Noncoding-Transcript-Variant
Cpgi464	CpG island 464	within coordinates
Rr396122	regulatory region 396122	393 bp downstream
Rr413837	regulatory region 413837	13 bp distal
Rr413838	regulatory region 413838	within coordinates
Tssr12440	transcription start site region 12440	1807 bp upstream
Tssr12441	transcription start site region 12441	within coordinates
Tssr12442	transcription start site region 12442	110 bp downstream