rs30158003 SNP Detail

Summary

• ID
  rs30158003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79649583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTAC TCACCATGGT CCCGGGTCCC
  Y
  ACAGCAGCGA TTGCCCGGGA TGCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49606372	NES12961572	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C	T		C	C	T	C		C
ss144782221	ENSMUSSNP4436792	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			C
ss319808652	CHEV_1_79668441	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30158003					SNP	C	C	C	T	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606372	NES12961572	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79649583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ap1s3	adaptor-related protein complex AP-1, sigma 3			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi464	CpG island 464			within coordinates
Rr396122	regulatory region 396122			285 bp downstream
Rr413837	regulatory region 413837			within coordinates
Rr413838	regulatory region 413838			96 bp proximal
Tssr12440	transcription start site region 12440			1699 bp upstream
Tssr12441	transcription start site region 12441			100 bp downstream
Tssr12442	transcription start site region 12442			218 bp downstream