rs30158222 SNP Detail

Summary

• ID
  rs30158222
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79437997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGAGCC TACCCCATAG
  CTCAGCAGTA GCATGCCGCA GTCAGCCCTG GGGCTGCCTC CCAGAGGTGG AGCTCCACTT
  CCCCACCACT CAACCCTTCT TTCCTGACAG GAGCAGGTAA GAGCACACGT ATCACAGTGC
  CATCCTCAGG GTCCTCATGG TCCTCACCCT TCATGACCTT CATGACCTCT TGCTCTATGA
  R
  CAGGTGCCTT TGGAAGAGCA GAGAGCATGT GAACCACTCT TGGGAAATGA CCGTCGGAAT
  TAAGTTCCAC TACTAGAGAA GTTCTTCCAG AGTACATAAA GGGGCTGGGA GACATGGCTC
  TGTGGTTAAG AGCATTGGCT GCTCTTCCAG AGGGTCCAGG TTCAATTCCC AGAAGCTATG
  TGGTAGCTCA AAACCATCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45401327	mCV24189747	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30158222					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79437997 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	364 bp proximal
Rr375221	regulatory region 375221	606 bp upstream
Rr578537	regulatory region 578537	652 bp distal
Rr578538	regulatory region 578538	858 bp proximal
Tssr29582	transcription start site region 29582	720 bp downstream
Tssr29583	transcription start site region 29583	1320 bp upstream
Tssr33705	transcription start site region 33705	969 bp downstream
Tssr33706	transcription start site region 33706	987 bp downstream
Tssr33707	transcription start site region 33707	1005 bp downstream
Tssr33708	transcription start site region 33708	1027 bp downstream
Tssr33709	transcription start site region 33709	1047 bp downstream
Tssr33710	transcription start site region 33710	1068 bp downstream
Tssr33711	transcription start site region 33711	1103 bp downstream
Tssr33712	transcription start site region 33712	1141 bp downstream
Tssr33713	transcription start site region 33713	1184 bp downstream
Tssr33714	transcription start site region 33714	1370 bp downstream
Tssr33715	transcription start site region 33715	1474 bp downstream