rs30158746 SNP Detail

Summary

• ID
  rs30158746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79649134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGTAGAAT GGATACGGTC
  ACTACTCCTG TTAAAATTCG AGCGAATCAA AACCCAAAAC TCTACTTTAT GAAGAACTGC
  TACCTGGTAT CCCTCCCGCC TCTCCAGCCA CAAACCGGGG TTTCATTTCT CCTCTTCACA
  GTCGCTCACC CCTCCAACTG CTGCGCTCTA CCAAAACACC TCGGGGAGCT CAAATGTCAC
  Y
  TCCTCAAAAA GGCCACCAAA TCAAAAATTA CCTCTCAGGC GGGTTTCTTG AGGCTTGGGA
  GTTCTCCTCG CTCTGGAAAG TTATTTTTAT TTCACCATTC CATCACCGTC TCTTTCCCTA
  GGCATCCTTT CCTACCAGTG TTAAGCACCT GGTCCCCCGC GACATCCCCA GCGCCTGGCT
  CGGACCAAGC GATCAGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606375	NES12961569	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30158746					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606375	NES12961569	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79649134 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ap1s3	adaptor-related protein complex AP-1, sigma 3			Intron
				Noncoding-Transcript-Variant
Cpgi464	CpG island 464			101 bp proximal
Rr396122	regulatory region 396122			within coordinates
Rr413837	regulatory region 413837			within coordinates
Rr413838	regulatory region 413838			545 bp proximal
Tssr12440	transcription start site region 12440			1250 bp upstream
Tssr12441	transcription start site region 12441			549 bp downstream
Tssr12442	transcription start site region 12442			667 bp downstream