rs30158747 SNP Detail

Summary

• ID
  rs30158747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79648576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTAAGCA GCTTTGGGCT
  CCATAGATAC TTGGGAACCA GCCTTCATCC CACCTCCATT AGGCAAATGA GCTATCTTCC
  TGGGTACCTT GTTCCTTGGG AAACTTGAGC AAGCCAAGAG AGCTGCTCCG TTATTTACAG
  GGGCCTTTTT GCACCCTGCA TTTACCTCAA CAAACAAAAA ATGGGCACGC TGGGAACCCT
  R
  CCGACATCCT CTGGGCTATC TGTCCGGGTG TCTCAGCAAT GGACTACTCC AACTCAACCT
  TCTTTCTAAA GTCACCTGCT CTCTGTCGTG CATCCAGAGA GTGCCTTCAG GAGGTCACTT
  CTCTGAGAAT TTGGGAAGTG TGCACAACCA GGGAAGTGGG ACAGGCTACC AAACTAGTCA
  CTGTCCCAGC AGAAAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49606376	NES12961568	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30158747					SNP	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606376	NES12961568	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79648576 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ap1s3	adaptor-related protein complex AP-1, sigma 3			Intron
				Noncoding-Transcript-Variant
Cpgi464	CpG island 464			659 bp proximal
Rr396122	regulatory region 396122			422 bp upstream
Rr413837	regulatory region 413837			164 bp proximal
Rr413838	regulatory region 413838			1103 bp proximal
Tssr12440	transcription start site region 12440			692 bp upstream
Tssr12441	transcription start site region 12441			1107 bp downstream
Tssr12442	transcription start site region 12442			1225 bp downstream