rs30158748 SNP Detail

Summary

• ID
  rs30158748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:79648462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCCCCTTCC TCAAGAAGTA AGCAGCTTTG GGCTCCATAG
  ATACTTGGGA ACCAGCCTTC ATCCCACCTC CATTAGGCAA ATGAGCTATC TTCCTGGGTA
  Y
  CTTGTTCCTT GGGAAACTTG AGCAAGCCAA GAGAGCTGCT CCGTTATTTA CAGGGGCCTT
  TTTGCACCCT GCATTTACCT CAACAAACAA AAAATGGGCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49606377	NES12961567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30158748					SNP	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49606377	NES12961567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79648462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ap1s3	adaptor-related protein complex AP-1, sigma 3			Intron
				Noncoding-Transcript-Variant
Cpgi464	CpG island 464			773 bp proximal
Rr396122	regulatory region 396122			536 bp upstream
Rr413837	regulatory region 413837			278 bp proximal
Rr413838	regulatory region 413838			1217 bp proximal
Tssr12440	transcription start site region 12440			578 bp upstream
Tssr12441	transcription start site region 12441			1221 bp downstream
Tssr12442	transcription start site region 12442			1339 bp downstream